FastQCFastQC Report
Wed 31 May 2023
EGAF00007932286

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932286
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences402247
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41551.0329474178800586No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17300.4300840031125155No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16590.4124331567420018No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12820.31870964854927447No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10510.2612822469776033No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10160.2525811255273501No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9650.23990234855698114No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9490.23592469303686542No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8860.22026267442640965No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8710.2165336223763011No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8670.2155392084962722No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7620.18943584414551257No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7300.1814805331052811No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7020.17451963594507852No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6450.16034923815466617No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6280.15612297916454318No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6190.15388554793447806No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6150.15289113405444912No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5880.14617884036425383No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5880.14617884036425383No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5870.14593023689424658No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5860.14568163342423934No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5290.13151123563382697No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4800.1193296656034725No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4470.11112575109323375No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4300.10689949210311077No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4280.1064022851630963No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)