FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007932294

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932294
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435909
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10300.23628784906941586No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7340.16838376817179732No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6180.14177270944164952No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5770.1323670766146145No Hit
TTCGATGCACTGCCGAAAAAGAAATCCCGTA5500.1261731232894939No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC5200.11929095292824879No Hit
TTCGACGCCCTGCCGAAGAAAAAATCTCGCA4520.10369136677609318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)