FastQCFastQC Report
Wed 31 May 2023
EGAF00007932297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932297
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438328
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8010.18273986603639283No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT6850.15627566571152196No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5000.11406982898651237No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC4550.10380354437772626No Hit
CTGACCGGTGGAGACTTCGTCACGCACCAGATCGTTCGCCAGCG4520.10311912540380719No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)