FastQCFastQC Report
Wed 31 May 2023
EGAF00007932298

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932298
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438328
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11080.25277874103411146No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8250.18821521782774545No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC7050.16083845887098247No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5420.12365169462137941No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4860.11087587377489004No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4720.10768191856326768No Hit
ACCGTAGGTGAGGTTGAAATTAACGCTAAAA4520.10311912540380719No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4510.10289098574583416No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)