FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932302

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932302
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438350
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11330.2584692597239649No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7990.18227443823428766No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC6650.1517052583551956No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5630.1284361811337972No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5260.11999543743583893No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4900.11178282194593361No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4780.10904528344929851No Hit
ACCGTAGGTGAGGTTGAAATTAACGCTAAAA4420.10083266795939319No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)