FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932304

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932304
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436429
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45341.0388860501937314No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG18780.4303105430665698No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13830.3168900325138797No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12330.2825201808312463No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10770.2467755350813076No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9630.22065444780250626No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9490.2174465949787938No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8490.1945333605237049No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7830.1794106257833462No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7510.17207839075771775No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7500.17184925841316687No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7260.1663500821439455No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6720.1539769355381975No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6500.14893602395807795No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6400.14664470051256906No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6220.14252031831065304No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5960.13656287735232991No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5910.13541721562957548No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5900.1351880832850246No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5860.13427155390682105No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5540.1269393188811926No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5500.12602278950298904No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5400.12373146605748014No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4970.11387877524179191No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4900.11227484882993569No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4710.10792133428346878No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGC4570.10471348145975634No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4550.10425521677065457No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA4370.10013083456873856No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)