FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007932306

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932306
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428376
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34090.7957962164080155No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG24010.5604889162791565No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG16880.3940463518030889No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16810.3924122733299718No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12650.2953013240704428No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG12430.2901656488692177No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12000.28012773824864134No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11290.26355351373559677No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10510.24534521074943508No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9790.2285375464545166No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG9760.22783722710889498No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9510.2220012325620483No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9360.21849963583394028No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6920.16154032905671653No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6760.15780529254673464No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6680.1559377742917437No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6520.15220273778176183No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6450.15056865930864474No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6320.14753394214428445No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6140.14333202607055484No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5800.13539507348684332No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5520.12885875959437504No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5410.1262909219937625No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5230.12208900592003287No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC5040.11765365006442938No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5000.11671989093693391No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4830.11275141464507817No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4810.1122845350813304No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4370.10201318467888024No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)