FastQCFastQC Report
Sun 21 May 2023
EGAF00007932308

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932308
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410167
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39720.9683860476342563No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32630.7955296257378092No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG21060.513449399878586No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG16630.4054446115850373No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15820.38569655774355327No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11930.29085713867766055No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11360.276960360048468No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11050.2694024628992581No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11030.26891485663156717No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9390.22893114268090803No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG9300.22673691447629868No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9260.22576170194091674No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8300.20235660109175044No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6640.16188528087340034No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6370.15530259625957232No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6260.15262076178727202No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6230.15188935238573556No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6220.15164554925189008No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6200.1511579429841991No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5810.1416496207642253No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5580.1360421486857792No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5430.13238510167809697No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5070.1236081888596596No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4740.11556268544275868No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4720.11507507917506772No Hit
CAGCCGCAGCGCCGTAAACGTCGTGCGGCTC4480.10922380396277613No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4440.10824859142739421No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4130.10069069427818425No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)