FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932315

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932315
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences379502
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15880.4184431175593277No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14230.3749650858229996No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12870.3391286475433595No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12200.32147393162618376No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11020.29038055135414303No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10750.2832659643427439No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10670.2811579385615886No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8740.2303018165912169No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7780.20500550721735325No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7730.2036879911041312No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6990.18418875262844464No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6860.1807632107340673No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6790.1789186881755564No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6740.17760117206233433No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6710.17681066239440107No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6420.1691690689377131No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG5360.14123772733740533No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5170.1362311661071615No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT4790.1262180436466738No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4610.12147498563907437No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4490.1183129469673414No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4420.11646842440883051No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC3950.10408377294454312No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG3890.10250275360867662No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)