FastQCFastQC Report
Sun 21 May 2023
EGAF00007932316

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932316
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences379502
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36860.971272878667306No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30390.800786293616371No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27980.7372820169590675No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16240.4279292335745266No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15820.41686209822346126No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15440.4068489757629736No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13890.36600597625308956No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8780.23135582948179456No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8200.21607264256841863No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7610.20052595243239824No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7300.19235735253042144No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7190.1894588170813329No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7010.18471575907373347No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6740.17760117206233433No Hit
GAACCGATCTACGCTACCATCGACGACCTGG5720.1507238433526042No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5270.13886619833360564No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4910.12938008231840675No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG4880.1285895726504735No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4870.1283260694278291No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4610.12147498563907437No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4540.11963046308056348No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT3970.10461077938983193No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT3900.10276625683132104No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)