FastQCFastQC Report
Sun 21 May 2023
EGAF00007932317

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932317
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences385365
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20040.5200264684130629No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11470.29763989983522116No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT11380.29530445162378527No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9610.24937397013221232No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9120.23665875209217235No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8960.23250684416073072No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7520.19513967277775615No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6520.169190248206246No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6470.16789277697767052No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6180.16036744385193258No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6050.15699401865763626No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT5930.15388008770905504No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5640.14635475458331712No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5420.14064588117758486No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5380.1396079041947245No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5350.13882942145757918No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5240.13597498475471306No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4800.1245572379432486No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4540.11781038755465598No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4450.11547493934322008No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4280.11106353716606335No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG4240.11002556018320293No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG4160.10794960621748212No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT4000.10379769828604052No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA3960.1027597213031801No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA3940.1022407328117499No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)