FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932318

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932318
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences385365
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37740.9793312833287922No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21040.545975892984573No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20180.5236593878530743No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11840.3072411869266799No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA11320.29374748614949464No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9850.25560183202937475No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9740.25274739532650864No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8820.22887392472071932No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8390.21771567215496998No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8220.21330426997781324No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7790.2021460174120639No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6940.1800890065262803No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6770.17567760434912355No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG6710.17412063887483295No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6350.16477884602908932No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5770.14972817977761343No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5600.1453167776004567No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5570.1445382948633114No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5450.14142436391473018No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4720.1224812839775278No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC4120.10691162923462173No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4090.10613314649747642No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG4040.1048356752689009No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG3960.1027597213031801No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA3910.10146225007460459No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)