FastQCFastQC Report
Sun 21 May 2023
EGAF00007932319

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932319
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407657
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21840.5357445107038515No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12240.3002524180867739No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT11200.27474077471992386No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10650.26124904024707046No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9670.2372092224590771No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9580.23500148409079202No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7940.1947715849353746No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7440.18250637177823514No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7090.1739207225682375No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6750.1655803776213827No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT6450.15822124972709903No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5950.14595603656995956No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5850.14350299393853164No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5810.1425217768859605No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5510.13516264899167682No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5470.13418143193910567No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5340.1309924765182494No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5260.12903004241310712No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4950.12142561025568063No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG4910.12044439320310948No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4840.11872726336110996No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT4710.11553830794025369No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4660.11431178662453974No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG4500.11038691841425512No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4290.10523552888825655No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)