FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932320

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932320
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407657
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA22800.5592937199655592No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22210.5448207684401347No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12670.3108005014019139No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA11300.27719381735135173No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10780.2644379956679267No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10470.25683356351050024No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10230.2509462611950733No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9620.23598270114336314No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8830.21660366435508283No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG8380.20556497251365732No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8370.20531966825051454No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7930.1945262806722318No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG7460.1829969803045207No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7410.18177045898880678No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6900.16925994156852453No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6250.15331516446424323No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5780.14178586409653213No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5710.14006873425453262No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5660.13884221293881865No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5390.13221899783396335No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG4780.11725543778225321No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA4590.11259465678254021No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4400.10793387578282723No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4380.10744326725654164No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC4300.10548083315139933No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4280.10499022462511376No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4210.10327309478311422No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4190.10278248625682866No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA4100.10057474788854356No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)