FastQCFastQC Report
Wed 31 May 2023
EGAF00007932326

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932326
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences374440
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38041.0159171028736247No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15080.4027347505608375No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12340.3295588078196774No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9360.24997329345155433No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9340.24943916248264075No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7970.2128511911120607No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7200.19228714880888795No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6790.1813374639461596No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5250.14020937933981414No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5080.13566926610404872No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4850.1295267599615426No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA3850.1028202115158637No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT3820.1020190150624933No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC3770.10068368764020938No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)