FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007932327

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932327
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441946
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20280.4588795916243161No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18030.40796839432871884No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17610.39846497083354077No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12110.27401537744430315No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11800.26700094581690975No Hit
CAGAGACAGGGTGGAATCGGCGTAAATTGCGTCACGCTGTTTGC10740.24301611509098398No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10260.23215505966792324No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7960.18011250243242388No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7230.16359464730985235No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7010.15861666357428283No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6840.15477003977861548No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG6000.13576319278825918No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5740.12988012110076796No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5650.12784367320894408No Hit
CGGGTGCAGAGTCTGAGCGAAACCGCTGTTCAGGGACTGGGTGA5640.12761740122096366No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5620.1271648572450028No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5290.11969788164164852No Hit
CGCCTGCACGGAAGCCAGGTCACGGCCGAAATCGTCGCTCGCCA5010.11336226597819643No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4910.11109954609839212No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4860.10996818615848995No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4810.1088368262185878No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4740.10725292230272478No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA4640.10499020242292045No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4620.10453765844695957No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4550.10295375453109655No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4510.10204866657917483No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)