FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932328

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932328
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441946
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45161.021844297719631No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18470.4179243617998579No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16780.3796843958311649No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12790.28940187262697253No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10950.24776782683857304No Hit
CACGCAGAACTGAAATCCCTGACCGGTGCGG10640.24075339521117964No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9730.22016264430496035No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8670.19617781357903455No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7980.18056504640838472No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7980.18056504640838472No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7910.1789811424925217No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6400.14481407230747648No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6400.14481407230747648No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6370.1441352563435352No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6280.1420988084517113No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5900.13350047290845488No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5750.13010639308874838No Hit
GTCCAGCGTGTTGCAAAACTGCGCGACGAAA5680.12852248917288536No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5600.12671231326904192No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5200.11766143374982464No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5140.11630380182194204No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5050.11426735393011815No Hit
CGCCTGAAGGGTCTGGCCCTGCAGCGCCAAG5040.11404108194213772No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4930.11155209007435297No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4890.11064700212243125No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4830.10928937019454865No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA4680.10589529037484217No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4620.10453765844695957No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)