FastQCFastQC Report
Sun 21 May 2023
EGAF00007932329

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932329
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444395
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19780.44509951732130193No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13230.2977081200283531No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11970.26935496573993856No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11780.26507949009327286No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11480.25832873907222176No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10250.23065065988591232No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10070.22660020927328167No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9720.21872433308205538No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9610.21624905770766997No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG9350.21039840682275904No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8720.19622182967855176No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8660.19487167947434153No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8540.19217137906592108No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8100.1822702775683795No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7670.17259420110487292No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG7340.16516837498171671No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG7310.16449329987961162No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7110.15999279919891088No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7010.1577425488585605No Hit
GAAATCCGGCAGGTCGGTGGAGCAGCTGAAAACGTAGCCACCAG6640.14941662259926417No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6500.14626627212277366No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG6480.14581622205470357No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6150.13839039593154737No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5900.13276477008067147No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5830.13118959484242623No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5470.12308869361716492No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5360.1206134182427795No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG5070.11408769225576346No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5040.11341261715365834No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG4900.11026226667716783No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4890.1100372416431328No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG4850.10913714150699266No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4680.10531171592839703No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG4640.10441161579225688No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG4550.10238639048594156No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4530.10193634041787149No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4480.10081121524769632No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)