FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007932330

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007932330
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444395
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25080.5643627853598713No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20110.45252534344445816No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16950.3814174326893867No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13930.3134598724108057No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13350.3004084204367736No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC12820.28848209363291666No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11170.25135296301713567No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10570.23785146097503349No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10570.23785146097503349No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10520.2367263358048583No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10440.23492613553257802No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10360.23312593526029773No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10130.22795035947749184No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9640.2169241328097751No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9530.2144488574353897No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9000.20252253063153275No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8180.18407047784065977No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8100.1822702775683795No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7920.17821982695574884No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7790.17529450151329337No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7620.17146907593469773No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6960.15661742368838533No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6710.15099179783750943No Hit
TCTAGCTCTAGCGGCTTTTCTGCCATCGCAG6570.14784144736101892No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6520.1467163221908437No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG6460.1453661719866335No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC6050.13614014559119703No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5810.13073954477435615No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5640.12691411919576054No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5550.12488889388944521No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5130.11543784245997366No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5110.1149877923919036No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG5100.11476276735786857No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5060.11386266722172843No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5040.11341261715365834No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5000.11251251701751819No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4910.11048729171120288No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG4810.10823704137085252No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG4790.10778699130278244No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4690.10553674096243208No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG4650.10463664082629193No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)