FastQCFastQC Report
Sun 21 May 2023
EGAF00007934648

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934648
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529297
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19300.36463460023389516No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16570.31305675263604366No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16420.31022280496583204No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13060.24674237715309175No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12240.2312501298892682No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10030.18949663421481702No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9300.17570475555312046No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9030.17060364974673953No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8180.1545446129488737No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC7390.1396191552190925No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7090.13395125987866924No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6400.1209151005956958No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5960.1126021874297417No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5900.11146860836165706No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)