FastQCFastQC Report
Wed 31 May 2023
EGAF00007934649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529297
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40410.7634655023550105No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21650.40903311373387724No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17110.3232589642488055No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15970.30172096195519715No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13070.24693130699777252No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10450.19743168769140954No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9800.1851512477871592No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9150.17287080788290884No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8710.16455789471695476No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8530.16115715751270082No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC7720.14585384009355806No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7670.14490919087015416No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6820.12885015407228834No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6380.12053724090633426No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6040.1141136261871879No Hit
CGCAACTACACTCCGACCCCGCCACCGGTGT5830.11014609944889164No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)