FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007934650

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934650
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502770
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17510.34827058098136326No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15810.31445790321618233No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14840.29516478707957916No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12420.2470314457903216No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12330.24524136284981204No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9710.19313005947053324No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8730.17363804522942897No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8710.17324024902042684No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7540.14996917079380234No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC6770.1346540167472204No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6270.1247091115221672No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6190.12311792668615869No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6030.11993555701414166No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5440.10820056884857888No Hit
TGCAGCTGCACGCTGAGCCGCGGTACCCGGACGGCGACGGTGAC5120.10183582950454481No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)