FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934651

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934651
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502770
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43390.8630188754301172No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38090.7576028800445532No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20050.39879069952463353No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15460.3074964695586451No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15180.3019273226326153No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12230.2432523818048014No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9460.18815760685800664No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9150.18199176561847366No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8790.17483143385643535No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7080.1408198579867534No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC6940.13803528452373848No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6400.12729478688068102No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6370.12669809256717784No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6240.124112417208664No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5670.11277522525210334No Hit
CGCAACTACACTCCGACCCCGCCACCGGTGT5550.11038844799809058No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)