FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528632
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9000.1702507604533967No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8480.16041404984942265No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6730.12730973531681775No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6670.12617473024712844No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5420.10252879129526778No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)