FastQCFastQC Report
Wed 31 May 2023
EGAF00007934655

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934655
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501604
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44510.8873533703877958No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10470.20873039289957812No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9810.19557260308928956No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6820.1359638280396488No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6570.13097981674787282No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6300.12559708455275476No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5390.10745528345069018No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)