FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007934661

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934661
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467295
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45270.9687670529323018No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT32210.689286211065815No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG21930.46929669694732445No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT21570.46159278400154075No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA18890.4042414320718176No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA17650.37770573192522927No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG17080.3655078697610717No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG15020.3214243679046427No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC14000.2995966145582555No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG12850.2749868926481131No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG12690.2715629313388759No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG12180.2606490546656823No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11720.2508051659016253No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10890.23304336660995728No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10120.21656555280925327No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT9690.20736365679067825No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9250.19794776319027596No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9220.197305770444794No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG9190.19666377769931198No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC9070.1940958067173841No Hit
CGTACTATCGAACGTCTGCTGGAAGATCCGC8950.19152783573545618No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA8840.1891738623353556No Hit
ATGTCCAACATGGACATCGATGGTATTAACA8700.18617789618977307No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8260.17676200258937075No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8070.17269604853465156No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC7420.1587862057158754No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7300.1562182347339475No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7180.1536502637520196No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6600.1412384040060347No Hit
GGCAAATCCCTGACCACCTCTATTGTTGGTC6550.1401684160968981No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6450.13802844027862485No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6380.13653045720583357No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG6320.13524647171486961No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6060.12968253458735918No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5990.1281845515145679No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5700.12197862164157545No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5510.11791266758685627No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5450.1166286820958923No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5430.11620068693223766No Hit
GTTGTTCCGCCGGGTGCCCCGGCAACTTGCG5350.11448870627761905No Hit
AACGGTCGTAACGCGTCCAAACGTCGTGCCT5150.11020875464107255No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5060.10828277640462664No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5030.10764078365914465No Hit
GGTGACCTGGTCGAATACATCATGAACTATA4900.10485881509538941No Hit
ATGCTGTACGCCTTCAAACTGGGTCGCAAAC4860.10400282476808011No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4750.10164885136797953No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG4690.10036486587701558No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)