FastQCFastQC Report
Sun 21 May 2023
EGAF00007934662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543005
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT30560.5627940810858095No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG19830.36519000745849484No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT19310.3556136683824274No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG15010.2764247106380236No Hit
CATGTCGATAACCGCGCGACGAGCTGCGCCGTTGCTCATGTTTA12160.22393900608650014No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG11110.2046021675675178No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG10900.20073479986372134No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG10530.19392086629036565No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9010.16592849052955314No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7600.13996187880406258No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA7500.13812027513558808No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7500.13812027513558808No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6930.12762313422528337No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA6360.11712599331497868No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT5950.10957541827423321No Hit
ATCGCTAATGTTGGTTTCATCAGAATAGTGAGAACGGTTGGAGT5750.10589221093728418No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)