FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007934663

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934663
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543005
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50820.9359029843187449No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT30100.5543227042108267No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC21720.39999631679266306No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG19990.36813657332805405No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA19600.3609543190210035No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17720.32633217005368276No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC12610.23222622259463538No Hit
GGTCAGGTGAAACCGGAAGTTAAACCAACCC12310.22670141158921187No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG11280.20773289380392446No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9740.17937219730941703No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7710.14198764283938453No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7470.1375677940350457No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6940.1278072945921308No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6370.11731015368182612No Hit
AGCACTGTCCCGTACTCCCCGCCGCAGTCCG6020.11086454084216536No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5700.10497140910304693No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5640.10386644690196223No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)