FastQCFastQC Report
Wed 31 May 2023
EGAF00007934665

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934665
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470664
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41630.8844950962894974No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26770.5687709278806112No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25750.547099416993864No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15870.3371832135026261No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15590.3312341712984209No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13780.292777862764095No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13100.2783301888395968No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13040.2770553940815529No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG11700.2485849778185712No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11420.24263593561436608No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11380.24178607244233677No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11160.23711182499617564No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG9880.20991620349123793No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG9320.19801811908282765No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9150.19440620060170313No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9110.19355633742967382No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9080.19291894005065183No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8770.18633250046742475No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8160.17337208709397786No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8120.17252222392194855No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7180.15255043937925994No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6870.14596399979603283No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6550.1391650944197984No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6360.13512824435265922No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6160.1308789284925127No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6060.12875427056243943No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5990.12726701001138815No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5890.1251423520813149No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5550.11791851511906581No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5360.11388166505192665No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5260.1117570071218534No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5250.11154454132884606No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5210.11069467815681676No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5080.10793262284772152No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)