FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934666

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934666
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481175
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG21410.4449524601236556No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG19250.40006234737881224No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG15640.3250376682080324No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14300.29718917233854625No Hit
GGCAATGCCGGCGCGCCAACGACCATCACGCGCTTTGTCAGTGA8990.18683431184080637No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8910.18517171507247882No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8360.17374136229022705No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7000.14547721722865903No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA6500.13508598742661193No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG5570.1157582999948044No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5120.10640619317296202No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)