FastQCFastQC Report
Sun 21 May 2023
EGAF00007934667

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934667
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481175
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG21140.4393411960305503No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG20260.42105263157894735No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG15410.32025770249909075No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14320.2976048215306281No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG9330.19390034810619838No Hit
CTGAAGGCGACCACCACCCACCTGTTCGAAG9250.19223775133787083No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9200.19119862835766613No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9120.1895360315893386No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8410.17478048527043175No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8080.1679222736010807No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7810.16231100950797528No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG6750.14028160232763548No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC5540.11513482620668157No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5040.10474359640463449No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)