FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934669

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934669
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430319
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA45241.0513130956337042No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37600.873770388944016No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34630.8047518236471083No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20910.4859185859792387No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA18310.42549829312672693No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18310.42549829312672693No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17620.4094636769466373No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15230.3539234846706746No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15220.35369109892893413No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT14520.337424097007104No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT13250.30791110780606945No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10530.24470218605267255No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10150.2358715278665362No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10090.23447721341609365No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10030.23308289896565104No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9700.22541416948821685No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9430.21913975446122527No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8910.20705569589072292No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8160.18962676526019068No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7680.17847224965665007No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7190.167085348311369No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA7010.16290240496004127No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6580.1529098180652028No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5310.12339682886416822No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5270.12246728589720648No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5230.12153774293024476No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5120.11898149977110004No Hit
GTGCAGGACGCCACCGTTGGCGCAGAAAAAG4770.110847998810185No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT4760.11061561306844457No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4550.10573551249189554No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA4540.10550312675015512No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4360.10132018339882738No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)