FastQCFastQC Report
Sun 21 May 2023
EGAF00007934674

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934674
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454597
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG18800.4135531030781109No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17500.3849563459503692No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10600.23317355811850937No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10250.22547443119950195No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10200.22437455592535807No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9520.20941625219700086No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8860.19489789857830123No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8240.1812594451789167No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7500.1649812911215868No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7060.1553023887091204No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6530.1436437108031949No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6170.13572460882935877No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5430.11944645477202885No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5230.1150469536754532No Hit
CGCACGCAGGCCGCTTGCGACGTTAGTGATGGCCTTATTACCCG4970.10932760224990487No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4860.10690787664678825No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4850.10668790159195948No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4810.10580800137264434No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA4570.10052860005675356No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)