FastQCFastQC Report
Sun 21 May 2023
EGAF00007934676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403987
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG21520.5326904083547244No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT20980.5193236416023288No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT10470.2591667553658905No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8350.2066898192268563No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8080.20000643585065858No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA7410.18342174376898265No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA6850.16955991158131326No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6350.15718327569946558No Hit
ACGCATTGCGCCGTTAGACGGGTTCAGATAGTACCAAGTGGAAC5890.1457967706881657No Hit
CCAGTTAATACCATCGTGACAAGCAGACGCGGACCAGGCTACGC4650.11510271370118345No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4580.11336998467772479No Hit
GTCATCGTCCTCAACAATAATCGGATCATCCGGCAGACGCGGCG4490.1111421902189922No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA4380.10841933032498571No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)