FastQCFastQC Report
Sun 21 May 2023
EGAF00007934677

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934677
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403987
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38410.9507731684435391No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC21890.5418491189072916No Hit
ATGTCCAACATGGACATCGATGGTATTAACA20960.5188285761670549No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA11190.27698911103575113No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8540.21139294086195845No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8300.20545215563867156No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7840.1940656506273717No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7500.18564953822771527No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6920.17129264060477192No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6040.14950976145272002No Hit
GCTATGCAGACCGGTTGGTACAAAGTAGGCA5840.14455910709998093No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4960.12277622794792903No Hit
CCAAAAGCTGCAAAACCGTGGCTGCGTGCTC4920.12178609707738121No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4760.11782557359518994No Hit
GGTGCACTGCTGAACGACAAACACTCCAACG4730.1170829754422791No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4720.11683544272464214No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA4260.10544893771334227No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)