FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934678

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934678
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407132
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG22610.5553481426171365No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT21400.5256280518357682No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9950.24439248204513522No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8690.2134442883389171No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8290.20361946494011773No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7290.17905740644311918No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6780.16653075660964994No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6380.15670593321085055No Hit
ACGCATTGCGCCGTTAGACGGGTTCAGATAGTACCAAGTGGAAC6020.14786359215193107No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4870.11961722488038277No Hit
CCAGTTAATACCATCGTGACAAGCAGACGCGGACCAGGCTACGC4680.11495043376595306No Hit
GTCATCGTCCTCAACAATAATCGGATCATCCGGCAGACGCGGCG4560.11200298674631323No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4140.10168692217757386No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)