FastQCFastQC Report
Wed 31 May 2023
EGAF00007934679

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934679
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407132
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35590.8741636619081773No Hit
ATGTCCAACATGGACATCGATGGTATTAACA22230.5460145603882771No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC22030.5411021486888773No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA10500.2579016142184844No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8990.22081290588801664No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8330.20460194727999764No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8100.198952673825688No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7430.18249609463269897No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6980.17144316830904965No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6330.15547783028600062No Hit
GCTATGCAGACCGGTTGGTACAAAGTAGGCA6050.14860045390684104No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5230.12845956593930224No Hit
CCAAAAGCTGCAAAACCGTGGCTGCGTGCTC5120.1257577395046324No Hit
GGTGCACTGCTGAACGACAAACACTCCAACG4860.1193716042954128No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4800.11789788078559289No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4350.10684495446194354No Hit
ATCCACGTTCAGTGCAACTCTTCCAAATTCC4350.10684495446194354No Hit
GACGCGGAACGTCACATCTCTGGCGAAGAAC4090.10045881925272394No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)