FastQCFastQC Report
Sun 21 May 2023
EGAF00007934680

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934680
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences388063
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12880.33190487111628786No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8750.22547885266052162No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6050.1559025209824178No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5050.13013350924978678No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4960.12781429819384996No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4200.10822984927705039No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG3920.10101452599191368No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)