FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413181
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT26060.6307163204503595No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG17180.4157984031211503No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG16100.38965973750003025No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT15320.37078181232922136No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13390.3240710487655531No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13110.3172943576785961No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG12970.31390601213511754No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12760.30882349381989976No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG11830.28631519842393527No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG11600.28074863074536344No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10110.24468695317548483No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT9830.23791026208852778No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9030.21854828755436478No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8980.21733816414597962No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8950.2166120901009485No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8830.21370779392082406No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8500.20572097942548181No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8380.20281668324535737No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8210.19870226365684773No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8180.19797618961181662No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7840.18974735043479735No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG7770.18805317766305807No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC7190.1740157461257899No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT7090.17159549930901954No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6760.1636086848136773No Hit
TTCGTAAGACGGCAGTGCGGACGGGGACTGACGATCGTCGGTGG6730.16288261076864619No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG6490.15707401840839727No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG5570.13480774769410983No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5510.1333555996040476No Hit
CGGGGTGTTACCACCGATCGTCAGAGTATCGGAGACTTTCGCAG5120.12391663701864315No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5110.12367461233696612No Hit
GTCCTCGTACAGAGAGCTCCAGCAAATGGTACCGTCTTCGATTG5040.12198043956522686No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4960.12004424211181056No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4950.11980221743013353No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4800.11617184720497796No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG4680.11326755102485352No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4500.10891110675466684No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4350.10528073652951127No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA4220.1021344156677098No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)