FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934690

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934690
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392529
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT24810.6320552112073249No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16000.40761319545816993No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG15430.39309197536997265No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT14410.36710663415951433No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13220.3367904027473129No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG12660.32252394090627695No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12300.3133526440084682No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12120.3087669955595638No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG11450.2916981929997529No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG11330.2886410940338166No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG9960.25373921417271084No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT8650.22036588379457314No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8650.22036588379457314No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8360.2129778946268938No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8360.2129778946268938No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8320.2119588616382484No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8030.20457087247056907No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7930.2020232899989555No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC7730.19692812505572835No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7610.1938710260897921No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7580.19310675134830801No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG7490.1908139271238558No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7330.18673779516927413No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7150.1821521467203697No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6110.15565728901558865No Hit
TTCGTAAGACGGCAGTGCGGACGGGGACTGACGATCGTCGGTGG5770.14699550861210253No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG5440.1385884864557778No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5340.13604090398416424No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG5290.13476711274835745No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG5280.13451235450119609No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5090.1296719478051303No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5010.12763388182783947No Hit
GTCCTCGTACAGAGAGCTCCAGCAAATGGTACCGTCTTCGATTG4990.12712436533351676No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4710.11999113441299879No Hit
CGGGGTGTTACCACCGATCGTCAGAGTATCGGAGACTTTCGCAG4630.11795306843570792No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4400.11209362875099674No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA4240.10801749679641504No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4200.10699846380776962No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4170.10623418906628554No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA4000.10190329886454248No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)