FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934691

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934691
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392529
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49681.2656389718976178No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24370.6208458483322251No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17650.44964830623979374No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17100.43563660264591914No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15450.3936014918642954No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15070.3839206784721638No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG14600.3719470408555801No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14320.3648138099350621No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13020.3316952378040858No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12990.3309309630626017No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG12740.32456200688356784No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12270.3125883692669841No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10790.27488414868710337No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9320.237434686354384No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9190.23412282914128638No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC8950.22800863120941384No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8420.21450644410986194No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8330.21221361988540974No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8320.2119588616382484No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8000.20380659772908497No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC7950.2025328064932782No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7700.1961638503142443No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7560.19259723485398533No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7490.1908139271238558No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7160.18240690496753106No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6900.17578319054133582No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6540.16661189364352696No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6030.1536192230382978No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5810.14801454160074798No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT5690.1449574426348117No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5670.14444792614048899No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5540.14113606892739136No Hit
CTGCCGGTTACCGTCACCATCGCCCCGATGT5520.14062655243306862No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5410.13782421171429374No Hit
TGTGAACGTTTCGGCGCCGCCGTCACTGACA5410.13782421171429374No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5370.1368051787256483No Hit
ATCGATGAAGACAACCCGACCGATAACGGCA5080.12941718955796896No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4910.12508629935622592No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4750.12101016740164422No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4620.11769831018854657No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4550.1159150024584171No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4470.11387693648112623No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT4360.11107459576235132No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC4100.10445088133615606No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)