FastQCFastQC Report
Sun 21 May 2023
EGAF00007934692

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934692
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380540
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA37830.9941136280023124No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA35920.9439217953434593No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT28510.7491985073842434No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC24140.6343616965365008No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17900.4703841908866348No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT16500.4335943659010879No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16400.43096652125926316No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC13330.3502916907552426No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC12020.315866925947338No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG11630.3056183318442214No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11580.304304409523309No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA10080.26488673989593736No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG10030.263572817575025No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG8980.23598044883586483No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG8070.2120670625952594No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG8030.21101592473852945No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7810.20523466652651495No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC7130.18736532296210648No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT7030.1847374783202817No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6600.17343774636043519No Hit
GGATGCGGACGCAGTGGTAGCACGAGACTGACGCGGGGCGGTAG6120.16082409207967627No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5740.1508382824407421No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG5570.14637094654963997No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5480.1440058863719977No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT5410.14216639512272033No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5410.14216639512272033No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5380.1413780417301729No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT4670.122720344773217No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4620.12140642245230461No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4300.11299731959846535No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4210.11063225942082304No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4150.10905555263572818No Hit
GTTGTAGAAAACGGTAGGGCTACGCGGTTCCGGGGAATCTGGGT4000.10511378567299101No Hit
CGGTTTGTCAACCGCGGTGGCGTCATCGTCGCTGCAATAGCTTG3930.10327429442371368No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT3920.10301150995953119No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)