FastQCFastQC Report
Wed 31 May 2023
EGAF00007934697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences417357
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA33300.7978780756043388No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19670.47129915156568597No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14600.3498204175322326No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13940.33400661783557006No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10580.25350000119801513No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8840.21180907472499563No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5120.12267674916198842No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4800.11500945233936415No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4670.11189461300517302No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4340.10398771315684174No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)