FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934699

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934699
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427716
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA34760.8126887934984897No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14650.342516997259864No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13600.31796799745625604No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13500.31562999747496No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10720.2506335979949312No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9110.21299179829606563No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5480.1281223989750208No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5380.12578439899372482No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5120.1197055990423552No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4800.11222399910220801No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4390.1026381991788944No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)