FastQCFastQC Report
Wed 31 May 2023
EGAF00007934707

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934707
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences384868
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19670.511084319818743No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19310.5017304634316181No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG18560.48224326262510786No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG17670.45911845100138227No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG14840.38558674662481685No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG14000.36376108172152527No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC13170.3421952461623206No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13160.34193541681823375No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12500.32478668010850476No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12100.3143935063450326No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG11930.30997640749555694No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC11780.3060789673342549No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG11520.2993234043879979No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG10610.27567893407609884No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9910.2574908799900225No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9780.2541130985168941No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9050.23514555639855741No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT8230.21383955018343953No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7840.20370620576405418No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC7340.190714738559714No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG7250.18837627446293273No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6770.17590446594676618No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6690.17382583119407172No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6650.1727865138177245No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG6330.16447197480694678No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG6270.16291299874242599No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6090.15823607054886352No Hit
TTCGGTGCACTGTACAGCGGTCGTATCGCTG5700.14810272612947817No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5450.14160699252730807No Hit
GGTGAACTGGCTGCATCTGCGGCATCCCTGA5330.1384890403982664No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5250.136410405645572No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5150.13381211220470393No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4840.12575740253801304No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC4470.11614371680680129No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4020.10445139632289512No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)