FastQCFastQC Report
Wed 31 May 2023
EGAF00007934708

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934708
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411910
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG23840.5787672064285888No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT20220.4908839309557913No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA10310.25029739506202814No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8610.20902624359690225No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG7720.18741958194751282No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5850.14202131533587434No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG5810.14105022941904785No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5240.12721225510427037No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT4190.10172124978757495No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)