FastQCFastQC Report
Wed 31 May 2023
EGAF00007934711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422537
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33620.7956699649971483No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25940.6139107344445575No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22360.5291844264525947No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19430.45984138667146307No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11150.2638822162319513No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10940.2589122372715289No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9730.23027569183290456No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8770.20755578801383073No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7940.18791253783692316No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7900.1869658751777951No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7420.17560592326825816No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7400.17513259193869413No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7190.17016261297827173No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7160.16945261598392566No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6570.15548934176178653No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6540.15477934476744049No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5720.13537276025531492No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC5640.13347943493705877No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5470.12945611863576445No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5440.12874612164141838No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5010.11856949805579156No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4970.11762283539666349No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4950.11714950406709944No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4800.11359951909536915No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA4640.10981286845885686No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC4550.10768287747581869No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4330.10247623285061427No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4320.10223956718583224No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4260.10081957319714013No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)