FastQCFastQC Report
Wed 31 May 2023
EGAF00007934715

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934715
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences387665
Sequences flagged as poor quality0
Sequence length31
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51481.327950679065688No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC50651.3065404408445436No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA41401.0679323642835954No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG32810.8463492964286174No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT31880.822359511433841No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG21820.5628571060064747No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA21000.5417048224626934No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG17810.45941728038383656No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17210.44393999974204534No Hit
GCTGAACGTGGTAAAGCAGGTGACCCGCACC15930.4109218010395574No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC15230.39286497362413425No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT14740.3802251944333381No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT13260.3420479021835864No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT12800.3301819870248797No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT12670.3268285762191583No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12610.32528084815497915No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC12390.3196058452529891No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12290.3170262984793572No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG12160.3136728876736357No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11810.3046444739659242No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG11370.29329446816194393No Hit
GGCGAAGCTGAACGTGGCAAAGCCGGTGATC11050.28503991848632193No Hit
CGTCACGCACATCGCCAGGGTGTAGGCGGCA11040.28478196380895876No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10850.27988082493905825No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC9600.24763649026865978No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9560.24660467155920704No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9070.23396489236841087No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8910.2298376175305999No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8850.22828988946642076No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8510.2195194304360724No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8150.21023306205099762No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC7910.20404214979428112No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT7740.19965692027910698No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC7520.19398191737711684No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7370.19011259721666904No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT7360.18985464253930584No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7300.1883069144751267No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6930.17876259141268877No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG6900.17798872738059923No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6860.17695690867114647No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6820.17592508996169373No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6770.1746353165748778No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6760.1743773618975146No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6760.1743773618975146No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6660.17179781512388273No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6630.1710239510917932No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6450.1663807668992558No Hit
GCACCGACCTGCAACATCCGTGTGACCGTTT6340.16354326544826076No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT6070.1565784891594547No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6000.15477280641791238No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5950.15348303303109645No Hit
AACACTTCTAGCGGTCAGACCCAATCTACCA5860.15116144093482775No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG5450.14058529916293708No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5210.13439438690622058No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG5080.13104097610049914No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5040.1300091573910464No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5030.1297512027136832No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC4950.1276875652947777No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4880.1258818825532354No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4810.12407619981169309No Hit
GCTCCGACCTGCAACATCCGTGTTACCGTTT4760.12278642642487715No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4610.11891710626442933No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4450.11478983142661835No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA4370.11272619400771285No Hit
GAACGCGCACGTGGTCGTGGCCGTGGCCGTG4250.1096307378793546No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA4100.10576141771890678No Hit
CCGCGTGTCCTGAGCAACTCCGGTTGGGGTC3930.10137618820373259No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)