FastQCFastQC Report
Sun 21 May 2023
EGAF00007934718

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934718
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418063
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18360.43916825932933556No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12950.30976192583414464No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12390.2963668155278032No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11960.2860812843997197No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9820.23489282715762938No Hit
AAACGCGTCACCGTCGCCGTGGCCACGAATGATAGCAGAAACGT9350.2236505024362357No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8860.21192978091818696No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA8860.21192978091818696No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG8790.2102553921298943No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG8120.19422909944195013No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7120.17030925960919766No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6960.16648208523595726No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6880.16456849804933707No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6610.1581101412944939No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6500.15547895891289112No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC5870.14040945981825706No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5770.1380174758349818No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5550.13275511107177626No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5490.13131992068181111No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5370.12844953990188082No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5340.12773194470689825No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4860.11625042158717705No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4690.11218404881560913No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4620.11050966002731646No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4430.10596489045909348No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG4430.10596489045909348No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4410.10548649366243844No Hit
AGTGATATCGTCCTGCGTACGGCGAACGTCCTGCTTGTACAGTT4290.10261611288250813No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4290.10261611288250813No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4280.10237691448418063No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG4230.10118092249254299No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)