FastQCFastQC Report
Wed 31 May 2023
EGAF00007934724

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934724
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497947
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT22480.45145366876394477No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC19480.39120629303921906No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG16770.3367828303012168No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15490.3110772833253338No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15490.3110772833253338No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14800.29722038690864694No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC14190.2849700871779527No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC13670.2745272087190002No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13010.26127278605956056No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12760.2562521714158334No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10120.2032344807780748No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9400.1887751106041406No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG9160.18395532054616254No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9060.1819470746886717No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG8980.180340478002679No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC8970.18013965341692992No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT8130.16327038821400672No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7460.14981514096881798No Hit
GAAGATGCTCGGACCGATACCAGTCCAAGACGGACGGTACTGAA7110.14278628046759997No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6890.13836813958112007No Hit
CTGCATCTGCACACCCATACGTTTCTGGTAGGCTTGCAGGTTCT6840.13736401665237466No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6490.13033515615115665No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6480.13013433156540757No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6470.12993350697965847No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6390.1283269102936658No Hit
TCATTTGAAACGCTGCATCTGGACGCCCATACGTTTCTGGTAGG6390.1283269102936658No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG6120.12290464647844046No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6030.12109722520669872No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5910.11868733017770967No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5710.11467083846272796No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5630.11306424177673527No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5490.11025269757624807No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5210.10462960917527367No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5080.10201888956053555No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)